The Smith-Waterman algorithm is known for its complexity.
The algorithm makes use of dynamic programming to reduce the search space.
The precision of the algorithm is high, however.
Software uses the Smith-Waterman algorithm to find matching regions and to calculate local alignments.
Several variants of the Smith-Waterman algorithm for DNA pattern searching are available for Windows.
You can find an overview of the most important solving tools and problems of the Smith-Waterman algorithm in the ec5d62056f
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